STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0022Hypothetical protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family. (220 aa)    
Predicted Functional Partners:
Daci_3963
Three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
  0.902
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
     
 0.901
Daci_4939
PFAM: outer membrane chaperone Skp (OmpH); KEGG: aav:Aave_1832 outer membrane chaperone Skp (OmpH); Belongs to the skp family.
   
 
 0.660
Daci_2920
PFAM: porin Gram-negative type; KEGG: aav:Aave_1125 porin, gram-negative type.
  
 
 0.575
Daci_3778
KEGG: aav:Aave_0646 UvrD/REP helicase.
 
   
 0.545
Daci_5096
PFAM: 17 kDa surface antigen; KEGG: pna:Pnap_1189 17 kDa surface antigen.
  
  
 0.483
Daci_0832
KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane.
  
   
 0.474
Daci_0023
KEGG: ajs:Ajs_0007 hypothetical protein.
       0.459
Daci_3594
PFAM: CheW domain protein; KEGG: mpt:Mpe_A2970 hypothetical protein.
  
   
 0.447
Daci_5627
KEGG: vei:Veis_4644 porin, gram-negative type.
  
 
 0.441
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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