STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0182PFAM: Extracellular ligand-binding receptor; KEGG: rme:Rmet_1640 putative UreA/short-chain amide ABC transporter. (413 aa)    
Predicted Functional Partners:
Daci_5160
PFAM: inner-membrane translocator; KEGG: aav:Aave_1285 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.841
Daci_5161
PFAM: inner-membrane translocator; KEGG: aav:Aave_1284 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.839
Daci_5164
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_1280 ABC transporter-related protein.
 
  
 0.835
Daci_5163
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3121 ABC transporter related.
 
  
 0.820
Daci_0183
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sme:SMc03929 putative zinc-type alcohol dehydrogenase transmembrane protein.
       0.773
Daci_0574
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_3953 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.570
Daci_6025
PFAM: inner-membrane translocator; KEGG: aav:Aave_4752 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.552
Daci_3309
PFAM: inner-membrane translocator; KEGG: ajs:Ajs_1680 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.498
Daci_0181
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0127 uncharacterized protein UPF0065.
       0.478
Daci_6024
PFAM: inner-membrane translocator; KEGG: bxe:Bxe_B2565 ABC branched chain amino acid family transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.477
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.