STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0576Hypothetical protein. (127 aa)    
Predicted Functional Partners:
Daci_0573
PFAM: inner-membrane translocator; KEGG: vei:Veis_3952 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.741
Daci_0574
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_3953 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
       0.741
Daci_0575
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA3560 amino-acid composite ATP-binding transmembrane ABC transporter protein.
       0.741
Daci_0572
PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_3951 extracellular ligand-binding receptor.
       0.527
Daci_0571
PFAM: regulatory protein TetR; KEGG: vei:Veis_3950 transcriptional regulator, TetR family.
       0.454
Daci_0570
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
       0.429
Daci_0569
TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: azo:azo0302 phenylacetic acid degradation protein PaaI.
       0.419
Daci_0568
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mpt:Mpe_A0984 putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.409
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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