STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0807PFAM: regulatory protein TetR; KEGG: vei:Veis_3950 transcriptional regulator, TetR family. (211 aa)    
Predicted Functional Partners:
Daci_0814
TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mpt:Mpe_A0991 putative ring-hydroxylation complex protein 4.
 
  
 0.647
Daci_0812
TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: vei:Veis_3947 phenylacetate-CoA oxygenase, PaaI subunit.
 
   
 0.616
Daci_1071
PFAM: regulatory protein TetR; KEGG: rfr:Rfer_3897 transcriptional regulator, TetR family.
  
     0.616
Daci_0810
TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: mpt:Mpe_A0987 putative phenylacetic acid degradation protein.
 
   
 0.590
Daci_0813
TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: mpt:Mpe_A0990 putative ring oxidation complex protein 3.
 
     0.586
Daci_0569
TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: azo:azo0302 phenylacetic acid degradation protein PaaI.
 
     0.578
Daci_0811
TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: mpt:Mpe_A0988 hypothetical protein.
 
     0.545
Daci_0806
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: rme:Rmet_5166 putative signal transduction histidine kinase.
       0.540
Daci_0579
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: pol:Bpro_4535 monooxygenase, FAD-binding.
  
 
   0.538
Daci_0580
PFAM: beta-lactamase domain protein; KEGG: vei:Veis_4551 beta-lactamase domain protein.
 
     0.486
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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