STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1286KEGG: aba:Acid345_4150 hypothetical protein. (390 aa)    
Predicted Functional Partners:
Daci_1287
TIGRFAM: DNA binding domain protein, excisionase family; KEGG: tfu:Tfu_2818 hypothetical protein.
 
  
 0.946
Daci_0424
PFAM: protein of unknown function DUF477; KEGG: ajs:Ajs_0315 protein of unknown function DUF477.
  
  
 0.799
Daci_2531
KEGG: xac:XAC4279 hypothetical protein.
  
     0.474
Daci_0335
KEGG: sfr:Sfri_3475 hypothetical protein.
  
  
 0.472
Daci_1720
KEGG: sfr:Sfri_3475 hypothetical protein.
  
  
 0.472
Daci_3822
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: pfl:PFL_1112 PspA/IM30 family protein.
  
  
 0.467
Daci_1979
KEGG: pna:Pnap_3593 hypothetical protein.
  
     0.404
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.