STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2014KEGG: vei:Veis_4644 porin, gram-negative type. (454 aa)    
Predicted Functional Partners:
Daci_5313
KEGG: hch:HCH_02671 hypothetical protein.
  
   
 0.753
Daci_2221
KEGG: pap:PSPA7_1712 hypothetical protein.
  
     0.726
Daci_0285
KEGG: ppf:Pput_3076 hypothetical protein.
  
     0.710
Daci_5149
PFAM: Ankyrin; KEGG: bur:Bcep18194_B0772 hypothetical protein.
  
    0.698
Daci_5620
KEGG: reh:H16_B1869 cytochrome c, mono-and diheme variants.
 
    0.677
Daci_1378
PFAM: porin Gram-negative type; KEGG: reu:Reut_B3712 porin, gram-negative type.
  
  
 
0.672
Daci_3305
PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: nfa:nfa43000 putative esterase.
  
     0.670
Daci_4991
KEGG: reh:H16_B0479 hypothetical protein.
 
 
 
 0.666
Daci_2291
KEGG: hch:HCH_06792 hypothetical protein.
  
     0.665
Daci_5627
KEGG: vei:Veis_4644 porin, gram-negative type.
  
  
 
0.657
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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