STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2227PFAM: YceI family protein; KEGG: aav:Aave_3506 YceI family protein; Belongs to the UPF0312 family. (190 aa)    
Predicted Functional Partners:
Daci_2226
PFAM: YceI family protein; KEGG: pna:Pnap_3578 YceI family protein; Belongs to the UPF0312 family.
 
     0.925
Daci_2228
PFAM: cytochrome B561; KEGG: aav:Aave_3507 cytochrome b561.
 
  
 0.907
Daci_2711
PFAM: cytochrome B561; KEGG: rme:Rmet_3013 cytochrome b561.
 
  
 0.616
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.