STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spea_1333KEGG: shw:Sputw3181_1399 hypothetical protein. (209 aa)    
Predicted Functional Partners:
Spea_1334
PFAM: protein of unknown function DUF400; KEGG: slo:Shew_1339 protein of unknown function DUF400.
 
  
 0.940
Spea_1332
KEGG: slo:Shew_1337 hypothetical protein.
 
   
 0.823
Spea_1536
KEGG: slo:Shew_1623 hypothetical protein.
  
   
 0.791
Spea_3591
PFAM: Sel1 domain protein repeat-containing protein; KEGG: slo:Shew_3290 Sel1 domain protein repeat-containing protein.
  
   
 0.775
Spea_0668
KEGG: sbl:Sbal_3402 hypothetical protein.
  
     0.771
Spea_3033
PFAM: type IV pilus assembly PilZ; KEGG: slo:Shew_2808 type IV pilus assembly PilZ.
  
     0.771
Spea_1544
KEGG: shw:Sputw3181_1854 hypothetical protein.
  
     0.770
Spea_2401
KEGG: slo:Shew_2110 hypothetical protein.
  
     0.749
Spea_2607
KEGG: slo:Shew_2434 hypothetical protein.
  
     0.744
Spea_2105
KEGG: slo:Shew_2001 hypothetical protein.
  
     0.740
Your Current Organism:
Shewanella pealeana
NCBI taxonomy Id: 398579
Other names: S. pealeana ATCC 700345, Shewanella pealeana ATCC 700345, Shewanella pealeana str. ATCC 700345, Shewanella pealeana strain ATCC 700345
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.