STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spea_1683PFAM: RDD domain containing protein; KEGG: sbl:Sbal_2662 RDD domain containing protein. (424 aa)    
Predicted Functional Partners:
Spea_0858
KEGG: saz:Sama_2823 hypothetical protein.
  
     0.767
Spea_2898
KEGG: sbl:Sbal_1435 hypothetical protein.
  
     0.751
Spea_1112
KEGG: slo:Shew_1127 hypothetical protein.
  
     0.749
Spea_2977
KEGG: slo:Shew_2757 hypothetical protein.
  
     0.738
Spea_2225
KEGG: slo:Shew_1996 hypothetical protein.
  
     0.728
Spea_1949
KEGG: shn:Shewana3_1604 hypothetical protein.
  
     0.715
Spea_3798
KEGG: shm:Shewmr7_0399 hypothetical protein.
  
     0.690
Spea_0836
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: slo:Shew_0849 TPR repeat-containing protein.
 
     0.675
Spea_2640
Serine/threonine protein kinase; PFAM: NERD domain protein; KEGG: slo:Shew_2466 hypothetical protein.
  
     0.670
Spea_0718
KEGG: shm:Shewmr7_3380 hypothetical protein.
  
     0.668
Your Current Organism:
Shewanella pealeana
NCBI taxonomy Id: 398579
Other names: S. pealeana ATCC 700345, Shewanella pealeana ATCC 700345, Shewanella pealeana str. ATCC 700345, Shewanella pealeana strain ATCC 700345
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.