STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spea_1705Proline racemase; In vitro, catalyzes the dehydration of trans-3-hydroxy-L- proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C), albeit with very low efficiency. The physiological substrate may be different. Displays neither trans-4-hydroxy-L-proline (t4LHyp) epimerase nor proline racemase activity. (346 aa)    
Predicted Functional Partners:
Spea_3170
PFAM: ornithine cyclodeaminase/mu-crystallin; Shikimate/quinate 5-dehydrogenase; KEGG: slo:Shew_2955 ornithine cyclodeaminase.
 
  
 0.971
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.918
Spea_3490
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
    
 0.908
Spea_3908
Prolyl aminopeptidase; PFAM: alpha/beta hydrolase fold; KEGG: slo:Shew_3544 alpha/beta hydrolase fold; Belongs to the peptidase S33 family.
     
  0.900
Spea_1706
PFAM: FAD dependent oxidoreductase; KEGG: slo:Shew_2360 D-amino-acid dehydrogenase.
 
   
 0.891
Spea_1704
KEGG: slo:Shew_2362 dihydrodipicolinate synthase.
 
    0.855
Spea_1655
PFAM: dihydrodipicolinate synthetase; KEGG: vpa:VP1335 probable dihydrodipicolinate synthetase; Belongs to the DapA family.
 
    0.744
Spea_0813
PFAM: FAD dependent oxidoreductase; KEGG: bba:Bd0322 D-amino acid dehydrogenase.
 
   
 0.706
Spea_1610
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: eca:ECA2039 putative ornithine cyclodeaminase.
 
   
 0.669
Spea_1702
PFAM: aldehyde dehydrogenase; KEGG: slo:Shew_2364 aldehyde dehydrogenase.
 
 
   0.669
Your Current Organism:
Shewanella pealeana
NCBI taxonomy Id: 398579
Other names: S. pealeana ATCC 700345, Shewanella pealeana ATCC 700345, Shewanella pealeana str. ATCC 700345, Shewanella pealeana strain ATCC 700345
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