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Spea_1765 protein (Shewanella pealeana) - STRING interaction network
"Spea_1765" - PFAM: 37kDa nucleoid-associated protein in Shewanella pealeana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spea_1765PFAM- 37kDa nucleoid-associated protein; KEGG- slo-Shew_1472 37 kDa nucleoid-associated protein (342 aa)    
Predicted Functional Partners:
rlmM
Ribosomal RNA large subunit methyltransferase M; Catalyzes the 2’-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily (360 aa)
   
          0.694
rraB
Regulator of ribonuclease activity B; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome (137 aa)
   
     
  0.670
seqA
Negative modulator of initiation of replication; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated (202 aa)
   
          0.631
Spea_1764
UPF0352 protein Spea_1764; PFAM- protein of unknown function DUF1414; KEGG- shn-Shewana3_2427 protein of unknown function DUF1414; Belongs to the UPF0352 family (71 aa)
 
     
  0.622
Spea_1763
PFAM- sulfatase; KEGG- shn-Shewana3_2428 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (594 aa)
 
     
  0.587
yihI
Der GTPase-activating protein YihI; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis (178 aa)
   
          0.568
Spea_1766
KEGG- slo-Shew_1473 hypothetical protein (291 aa)
              0.557
proQ
RNA chaperone ProQ; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities (212 aa)
   
        0.538
Spea_3054
Lipoprotein NlpI; May be involved in cell division (297 aa)
   
          0.508
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP (525 aa)
           
  0.483
Your Current Organism:
Shewanella pealeana
NCBI taxonomy Id: 398579
Other names: S. pealeana ATCC 700345, Shewanella pealeana, Shewanella pealeana ATCC 700345, Shewanella pealeana ATCC700345, Shewanella pealeana str. ATCC 700345, Shewanella pealeana strain ATCC 700345
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