STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speAArginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (637 aa)    
Predicted Functional Partners:
Spea_2478
TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: slo:Shew_1621 putative agmatinase; Belongs to the arginase family.
 
 
 0.964
aguA
Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: pen:PSEEN2191 porphyromonas-type peptidyl-arginine deiminase.
 
  
 0.958
Spea_3515
PFAM: arginine N-succinyltransferase beta subunit; KEGG: slo:Shew_0579 arginine N-succinyltransferase.
     
  0.900
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: slo:Shew_0206 argininosuccinate lyase.
     
 0.841
Spea_2495
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: sbm:Shew185_1715 malonyl CoA-acyl carrier protein transacylase.
   
    0.645
Spea_2479
PFAM: S-adenosylmethionine decarboxylase; KEGG: saz:Sama_1962 adenosylmethionine decarboxylase.
     
 0.529
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
     
  0.499
Spea_2975
PFAM: conserved hypothetical protein; KEGG: sdn:Sden_2557 conserved hypothetical protein 730.
  
   
 0.486
gpsA
PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: slo:Shew_3803 glycerol-3-phosphate dehydrogenase (NAD(P)(+)).
   
    0.476
Spea_1204
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: vpa:VP1774 putative carbon-nitrogen hydrolase.
 
   
 0.472
Your Current Organism:
Shewanella pealeana
NCBI taxonomy Id: 398579
Other names: S. pealeana ATCC 700345, Shewanella pealeana ATCC 700345, Shewanella pealeana str. ATCC 700345, Shewanella pealeana strain ATCC 700345
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