Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
loading ...
currently showing
Fusion
Genes that are sometimes fused into single open reading frames.
loading ...
currently showing
Textmining
Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
loading ...
currently showing
Coexpression
Proteins whose genes are observed to be correlated in expression, across a large number of experiments.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spea_3313
KEGG: cps:CPS_2421 hypothetical protein. (245 aa)
Predicted Functional Partners:
Spea_3312
PFAM: protein of unknown function DUF1326; KEGG: cps:CPS_2422 hypothetical protein.
0.922
Your Current Organism:
Shewanella pealeana
NCBI taxonomy Id: 398579 Other names: S. pealeana ATCC 700345, Shewanella pealeana ATCC 700345, Shewanella pealeana str. ATCC 700345, Shewanella pealeana strain ATCC 700345