STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spea_3605KEGG: shn:Shewana3_0682 SpoIIAA family protein. (97 aa)    
Predicted Functional Partners:
Spea_3606
PFAM: toluene tolerance family protein; KEGG: sbl:Sbal_3659 toluene tolerance family protein.
  
 
 0.988
Spea_3607
PFAM: Mammalian cell entry related domain protein; KEGG: shw:Sputw3181_3450 mammalian cell entry related domain protein.
  
 0.966
Spea_3609
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3304 ABC transporter-related protein.
  
 0.953
Spea_3608
PFAM: protein of unknown function DUF140; KEGG: slo:Shew_3303 protein of unknown function DUF140.
  
 0.943
Spea_3604
PFAM: BolA family protein; KEGG: slo:Shew_3299 BolA family protein; Belongs to the BolA/IbaG family.
       0.779
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.728
Spea_0605
PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: slo:Shew_3218 carbamoyl-phosphate synthase L chain, ATP-binding.
   
    0.580
Spea_3611
KEGG: slo:Shew_3306 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS).
     
 0.469
Spea_3601
PFAM: response regulator receiver; KEGG: vha:VIBHAR_05158 hypothetical protein.
       0.438
Spea_3602
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: vha:VIBHAR_05159 hypothetical protein.
       0.438
Your Current Organism:
Shewanella pealeana
NCBI taxonomy Id: 398579
Other names: S. pealeana ATCC 700345, Shewanella pealeana ATCC 700345, Shewanella pealeana str. ATCC 700345, Shewanella pealeana strain ATCC 700345
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.