node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Dshi_0065 | Dshi_0066 | Dshi_0065 | Dshi_0066 | KEGG: sil:SPO3441 hypothetical protein, no swissprot hit, ref hits to several hypothetical proteins in roseobacter strains. | PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein KEGG: sil:SPO3440 20-beta-hydroxysteroid dehydrogenase, putative, BLAST hits to several dehydrogenase proteins: swissprot hit to Uncharacterized oxidoreductase SSP1627 from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 (Belongs to the short-chain dehydrogenases/reductases (SDR) family and ref hits to 20-beta-hydroxysteroid dehydrogenase, putative from Silicibacter pomeroyi DSS-3. | 0.572 |
Dshi_0065 | caiD | Dshi_0065 | Dshi_0067 | KEGG: sil:SPO3441 hypothetical protein, no swissprot hit, ref hits to several hypothetical proteins in roseobacter strains. | PFAM: Enoyl-CoA hydratase/isomerase KEGG: rsh:Rsph17029_2572 enoyl-CoA hydratase/isomerase; COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.709 |
Dshi_0066 | Dshi_0065 | Dshi_0066 | Dshi_0065 | PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein KEGG: sil:SPO3440 20-beta-hydroxysteroid dehydrogenase, putative, BLAST hits to several dehydrogenase proteins: swissprot hit to Uncharacterized oxidoreductase SSP1627 from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 (Belongs to the short-chain dehydrogenases/reductases (SDR) family and ref hits to 20-beta-hydroxysteroid dehydrogenase, putative from Silicibacter pomeroyi DSS-3. | KEGG: sil:SPO3441 hypothetical protein, no swissprot hit, ref hits to several hypothetical proteins in roseobacter strains. | 0.572 |
Dshi_0066 | Dshi_1963 | Dshi_0066 | Dshi_1963 | PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein KEGG: sil:SPO3440 20-beta-hydroxysteroid dehydrogenase, putative, BLAST hits to several dehydrogenase proteins: swissprot hit to Uncharacterized oxidoreductase SSP1627 from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 (Belongs to the short-chain dehydrogenases/reductases (SDR) family and ref hits to 20-beta-hydroxysteroid dehydrogenase, putative from Silicibacter pomeroyi DSS-3. | Putative modular PKS system; SWISSPROT: Q03131: Erythronolide synthase, modules 1 and 2; Q03132: Erythronolide synthase, modules 3 and 4; PFAM: PF03060, PF08659, PF00109, PF02801, PF00698; TIGRFAM: TIGR02813 polyketide-type polyunsaturated fatty acid synthase PfaA; COG: COG3321 - Polyketide synthase modules and related proteins. | 0.430 |
Dshi_0066 | caiD | Dshi_0066 | Dshi_0067 | PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein KEGG: sil:SPO3440 20-beta-hydroxysteroid dehydrogenase, putative, BLAST hits to several dehydrogenase proteins: swissprot hit to Uncharacterized oxidoreductase SSP1627 from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 (Belongs to the short-chain dehydrogenases/reductases (SDR) family and ref hits to 20-beta-hydroxysteroid dehydrogenase, putative from Silicibacter pomeroyi DSS-3. | PFAM: Enoyl-CoA hydratase/isomerase KEGG: rsh:Rsph17029_2572 enoyl-CoA hydratase/isomerase; COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.830 |
Dshi_1753 | Dshi_1893 | Dshi_1753 | Dshi_1893 | COG: COG1024 - Enoyl-CoA hydratase/carnithine racemase; PFAM: PF00378; PROSITE: PS00166; Belongs to the enoyl-CoA hydratase/isomerase family. | LOV-regulator, Blue-light sensing; Similar to to known LOV domains (e.g SB1 and SB2 from Pseudomonas putida); highly conserved LOV consensus region including the photoactive Cys. TIGRFAM: TIGR00229 PAS domain S-box; COG: COG0642 - Signal transduction histidine kinase; SMART: SM00091: PAS domain; SM00086: PAC motif, SM00388: Histidine kinase-like ATPases, SM00448 : cheY-homologous receiver domain; PROSITE: PS50112: PAS repeat profile, PS50113: PAC domain profile, PS50110: Response regulatory domain profile, PS50109: Histidine kinase domain profile; PFAM: PF00072: Response regulator rece [...] | 0.800 |
Dshi_1753 | Dshi_1963 | Dshi_1753 | Dshi_1963 | COG: COG1024 - Enoyl-CoA hydratase/carnithine racemase; PFAM: PF00378; PROSITE: PS00166; Belongs to the enoyl-CoA hydratase/isomerase family. | Putative modular PKS system; SWISSPROT: Q03131: Erythronolide synthase, modules 1 and 2; Q03132: Erythronolide synthase, modules 3 and 4; PFAM: PF03060, PF08659, PF00109, PF02801, PF00698; TIGRFAM: TIGR02813 polyketide-type polyunsaturated fatty acid synthase PfaA; COG: COG3321 - Polyketide synthase modules and related proteins. | 0.726 |
Dshi_1753 | Dshi_2676 | Dshi_1753 | Dshi_2676 | COG: COG1024 - Enoyl-CoA hydratase/carnithine racemase; PFAM: PF00378; PROSITE: PS00166; Belongs to the enoyl-CoA hydratase/isomerase family. | Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein. | 0.789 |
Dshi_1753 | Dshi_2708 | Dshi_1753 | Dshi_2708 | COG: COG1024 - Enoyl-CoA hydratase/carnithine racemase; PFAM: PF00378; PROSITE: PS00166; Belongs to the enoyl-CoA hydratase/isomerase family. | Sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein SMART: PAS domain containing protein. | 0.791 |
Dshi_1753 | Dshi_3332 | Dshi_1753 | Dshi_3332 | COG: COG1024 - Enoyl-CoA hydratase/carnithine racemase; PFAM: PF00378; PROSITE: PS00166; Belongs to the enoyl-CoA hydratase/isomerase family. | Sensor histidine kinase/response regulator; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein KEGG: rde:RD1_0357 hybrid sensory histidine kinase, putative. | 0.789 |
Dshi_1753 | Dshi_3346 | Dshi_1753 | Dshi_3346 | COG: COG1024 - Enoyl-CoA hydratase/carnithine racemase; PFAM: PF00378; PROSITE: PS00166; Belongs to the enoyl-CoA hydratase/isomerase family. | KEGG: sil:SPO0094 sensory box sensor histidine kinase/response regulator TIGRFAM: PAS sensor protein PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein SMART: PAS domain containing protein; PAC repeat-containing protein. | 0.799 |
Dshi_1753 | caiD | Dshi_1753 | Dshi_0067 | COG: COG1024 - Enoyl-CoA hydratase/carnithine racemase; PFAM: PF00378; PROSITE: PS00166; Belongs to the enoyl-CoA hydratase/isomerase family. | PFAM: Enoyl-CoA hydratase/isomerase KEGG: rsh:Rsph17029_2572 enoyl-CoA hydratase/isomerase; COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.798 |
Dshi_1753 | hbdA | Dshi_1753 | Dshi_0214 | COG: COG1024 - Enoyl-CoA hydratase/carnithine racemase; PFAM: PF00378; PROSITE: PS00166; Belongs to the enoyl-CoA hydratase/isomerase family. | PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding KEGG: sil:SPO0717 3-hydroxybutyryl-CoA dehydrogenase; high swissprot, good RBS site AGGAT. | 0.987 |
Dshi_1893 | Dshi_1753 | Dshi_1893 | Dshi_1753 | LOV-regulator, Blue-light sensing; Similar to to known LOV domains (e.g SB1 and SB2 from Pseudomonas putida); highly conserved LOV consensus region including the photoactive Cys. TIGRFAM: TIGR00229 PAS domain S-box; COG: COG0642 - Signal transduction histidine kinase; SMART: SM00091: PAS domain; SM00086: PAC motif, SM00388: Histidine kinase-like ATPases, SM00448 : cheY-homologous receiver domain; PROSITE: PS50112: PAS repeat profile, PS50113: PAC domain profile, PS50110: Response regulatory domain profile, PS50109: Histidine kinase domain profile; PFAM: PF00072: Response regulator rece [...] | COG: COG1024 - Enoyl-CoA hydratase/carnithine racemase; PFAM: PF00378; PROSITE: PS00166; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.800 |
Dshi_1893 | Dshi_1963 | Dshi_1893 | Dshi_1963 | LOV-regulator, Blue-light sensing; Similar to to known LOV domains (e.g SB1 and SB2 from Pseudomonas putida); highly conserved LOV consensus region including the photoactive Cys. TIGRFAM: TIGR00229 PAS domain S-box; COG: COG0642 - Signal transduction histidine kinase; SMART: SM00091: PAS domain; SM00086: PAC motif, SM00388: Histidine kinase-like ATPases, SM00448 : cheY-homologous receiver domain; PROSITE: PS50112: PAS repeat profile, PS50113: PAC domain profile, PS50110: Response regulatory domain profile, PS50109: Histidine kinase domain profile; PFAM: PF00072: Response regulator rece [...] | Putative modular PKS system; SWISSPROT: Q03131: Erythronolide synthase, modules 1 and 2; Q03132: Erythronolide synthase, modules 3 and 4; PFAM: PF03060, PF08659, PF00109, PF02801, PF00698; TIGRFAM: TIGR02813 polyketide-type polyunsaturated fatty acid synthase PfaA; COG: COG3321 - Polyketide synthase modules and related proteins. | 0.620 |
Dshi_1893 | Dshi_2676 | Dshi_1893 | Dshi_2676 | LOV-regulator, Blue-light sensing; Similar to to known LOV domains (e.g SB1 and SB2 from Pseudomonas putida); highly conserved LOV consensus region including the photoactive Cys. TIGRFAM: TIGR00229 PAS domain S-box; COG: COG0642 - Signal transduction histidine kinase; SMART: SM00091: PAS domain; SM00086: PAC motif, SM00388: Histidine kinase-like ATPases, SM00448 : cheY-homologous receiver domain; PROSITE: PS50112: PAS repeat profile, PS50113: PAC domain profile, PS50110: Response regulatory domain profile, PS50109: Histidine kinase domain profile; PFAM: PF00072: Response regulator rece [...] | Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein. | 0.913 |
Dshi_1893 | Dshi_2708 | Dshi_1893 | Dshi_2708 | LOV-regulator, Blue-light sensing; Similar to to known LOV domains (e.g SB1 and SB2 from Pseudomonas putida); highly conserved LOV consensus region including the photoactive Cys. TIGRFAM: TIGR00229 PAS domain S-box; COG: COG0642 - Signal transduction histidine kinase; SMART: SM00091: PAS domain; SM00086: PAC motif, SM00388: Histidine kinase-like ATPases, SM00448 : cheY-homologous receiver domain; PROSITE: PS50112: PAS repeat profile, PS50113: PAC domain profile, PS50110: Response regulatory domain profile, PS50109: Histidine kinase domain profile; PFAM: PF00072: Response regulator rece [...] | Sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein SMART: PAS domain containing protein. | 0.927 |
Dshi_1893 | Dshi_3332 | Dshi_1893 | Dshi_3332 | LOV-regulator, Blue-light sensing; Similar to to known LOV domains (e.g SB1 and SB2 from Pseudomonas putida); highly conserved LOV consensus region including the photoactive Cys. TIGRFAM: TIGR00229 PAS domain S-box; COG: COG0642 - Signal transduction histidine kinase; SMART: SM00091: PAS domain; SM00086: PAC motif, SM00388: Histidine kinase-like ATPases, SM00448 : cheY-homologous receiver domain; PROSITE: PS50112: PAS repeat profile, PS50113: PAC domain profile, PS50110: Response regulatory domain profile, PS50109: Histidine kinase domain profile; PFAM: PF00072: Response regulator rece [...] | Sensor histidine kinase/response regulator; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein KEGG: rde:RD1_0357 hybrid sensory histidine kinase, putative. | 0.927 |
Dshi_1893 | Dshi_3346 | Dshi_1893 | Dshi_3346 | LOV-regulator, Blue-light sensing; Similar to to known LOV domains (e.g SB1 and SB2 from Pseudomonas putida); highly conserved LOV consensus region including the photoactive Cys. TIGRFAM: TIGR00229 PAS domain S-box; COG: COG0642 - Signal transduction histidine kinase; SMART: SM00091: PAS domain; SM00086: PAC motif, SM00388: Histidine kinase-like ATPases, SM00448 : cheY-homologous receiver domain; PROSITE: PS50112: PAS repeat profile, PS50113: PAC domain profile, PS50110: Response regulatory domain profile, PS50109: Histidine kinase domain profile; PFAM: PF00072: Response regulator rece [...] | KEGG: sil:SPO0094 sensory box sensor histidine kinase/response regulator TIGRFAM: PAS sensor protein PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein SMART: PAS domain containing protein; PAC repeat-containing protein. | 0.955 |
Dshi_1893 | caiD | Dshi_1893 | Dshi_0067 | LOV-regulator, Blue-light sensing; Similar to to known LOV domains (e.g SB1 and SB2 from Pseudomonas putida); highly conserved LOV consensus region including the photoactive Cys. TIGRFAM: TIGR00229 PAS domain S-box; COG: COG0642 - Signal transduction histidine kinase; SMART: SM00091: PAS domain; SM00086: PAC motif, SM00388: Histidine kinase-like ATPases, SM00448 : cheY-homologous receiver domain; PROSITE: PS50112: PAS repeat profile, PS50113: PAC domain profile, PS50110: Response regulatory domain profile, PS50109: Histidine kinase domain profile; PFAM: PF00072: Response regulator rece [...] | PFAM: Enoyl-CoA hydratase/isomerase KEGG: rsh:Rsph17029_2572 enoyl-CoA hydratase/isomerase; COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.799 |