STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmHPFAM: ribosomal protein L34, low swissprot and Ref ZP hit to 50S ribbosomal protein L34 from Silicibacter pomeroyi and Roseovarius nubinhibens ISM; Belongs to the bacterial ribosomal protein bL34 family. (44 aa)    
Predicted Functional Partners:
rpmF
TIGRFAM: TIGR01031-ribosomal protein L32; PFAM: pfam01783; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.990
rpmB
Swiss-Prot: Q5LUS9- 50S ribosomal protein L28 TIGR00009: ribosomal protein L28 PFAM: ribosomal protein L28 KEGG: sil:SPO0974 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.989
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.984
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.984
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
 
 0.982
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.980
rpmI
PFAM: ribosomal protein L35 KEGG: sil:SPO3599 ribosomal protein L35; high swissprot; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.979
rpsU
PFAM: ribosomal protein S21 KEGG: sil:SPO0229 ribosomal protein S21, bad Ref and swissprot hits to S21, bad GC frame plot; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.979
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.979
rpsP
PFAM: ribosomal protein S16 KEGG: jan:Jann_0749 ribosomal protein S16; middle swissprot hit to 30S ribosomal protein S16 from Silicibacter pomeroyi; Belongs to the bacterial ribosomal protein bS16 family.
   
 
 0.978
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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