STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_0885ABC transporter (importer) gene cluster: 2nd ATP binding cassette (ABC) domain; part of a heterotetramer; ATPase subunit; Belongs to the ABC transporter superfamily. (322 aa)    
Predicted Functional Partners:
Dshi_0882
Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 2nd membrane spanning domain (MSD); part of a heterotetramer.
  
 0.989
Dshi_2599
PFAM: binding-protein-dependent transport systems inner membrane component Swiss-Prot: P0AFA9-Nickel transport system permease protein nikC COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
 0.989
Dshi_3009
ABC transporter related; Contain signal peptide und Transmembrane Helices; MSD.
  
 0.965
Dshi_0881
Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 1st membrane spanning domain (MSD); part of a heterotetramer.
 
 0.953
Dshi_2598
PFAM: binding-protein-dependent transport systems inner membrane component Swiss-Prot: P75798-Glutathione transport system permease protein gsiC COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.901
Dshi_3010
ABC transporter related; Contain signal peptide und Transmembrane Helices; MSD.
 
 0.899
Dshi_0884
ABC transporter (importer) gene cluster: 1st ATP binding cassette (ABC) domain; part of a heterotetramer; ATPase subunit; Belongs to the ABC transporter superfamily.
 
   
0.855
Dshi_1489
Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 1st membrane spanning domain (MSD); part of a heterotetramer.
 
 0.837
oppBC2
ABC peptide transporter; PFAM: binding-protein-dependent transport systems inner membrane component; NCBI conserved domains: COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; high swissprot hit to Inner membrane ABC transporter permease protein yejE from Escherichia coli K12; high Ref YP hit to ABC peptide transporter, inner membrane subunit [Rhodobacter Rhodobacter sphaeroides 2.4.1]; permease protein; alternative gene name: dppBC.
   
 0.835
Dshi_1488
Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 2nd membrane spanning domain (MSD); part of a heterotetramer.
  
 0.826
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.