STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_2323Hypothetical protein. (252 aa)    
Predicted Functional Partners:
Dshi_2322
Conserved hypothetical protein; PFAM: protein of unknown function DUF1326 KEGG: rde:RD1_2286 hypothetical protein.
 
    0.962
gcvT1
Swiss-Prot: Q67N36-Aminomethyltransferase gcvT PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; Belongs to the GcvT family.
 
    0.880
Dshi_2324
PFAM: regulatory protein GntR HTH; GntR domain protein KEGG: rde:RD1_2283 transcriptional regulator, GntR family, putative; GntR HTH.
 
     0.869
Dshi_2319
Putative quinone oxidoreductase; Swiss-Prot: P26646-Protein yhdH TIGRFAM: Quinone oxidoreductase putative YhdH/YhfP PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; YhdH.
       0.790
Dshi_2321
Conserved hypothetical protein; Swiss-Prot: Q02886-Protein dinB PFAM: DinB family protein KEGG: acr:Acry_1562 DinB family protein COG2318: Uncharacterized protein conserved in bacteria; associated with DNA damage-inducible (din) genes.
  
    0.770
Dshi_3238
KEGG: jan:Jann_0110 hypothetical protein.
  
     0.475
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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