STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Glov_0316KEGG: ppd:Ppro_0253 sex pilus assembly protein. (815 aa)    
Predicted Functional Partners:
Glov_0318
PFAM: TraB pilus assembly family protein; KEGG: ppd:Ppro_0255 TraB pilus assembly family protein.
 
   
 0.961
Glov_0311
PFAM: TraU family protein; KEGG: ppd:Ppro_0249 TraU family protein.
 
   
 0.960
Glov_0313
KEGG: ppd:Ppro_0250 conserved hypothetical cytosolic protein.
 
   
 0.958
Glov_0310
TIGRFAM: type-F conjugative transfer system pilin assembly protein TrbC; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; KEGG: ppd:Ppro_0248 hypothetical protein.
 
   
 0.957
Glov_0314
KEGG: ppd:Ppro_0251 hypothetical protein.
 
   
 0.956
Glov_0320
KEGG: ppd:Ppro_0257 conserved hypothetical sex pilus assembly and synthesis protein.
 
     0.956
Glov_0308
KEGG: ppd:Ppro_0246 type IV secretory protease.
 
   
 0.943
Glov_0305
KEGG: ppd:Ppro_0243 hypothetical protein.
 
   
 0.940
Glov_0250
KEGG: ppd:Ppro_0195 TraG family protein.
 
  
 0.854
Glov_0317
KEGG: ppd:Ppro_0254 hypothetical protein.
       0.816
Your Current Organism:
Geobacter lovleyi
NCBI taxonomy Id: 398767
Other names: G. lovleyi SZ, Geobacter lovleyi SZ, Geobacter lovleyi str. SZ, Geobacter lovleyi strain SZ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.