STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_002510281.1Protein Z, putative; Encoded by transcript RCOM_1591990A; Belongs to the serpin family (391 aa)    
Predicted Functional Partners:
XP_002534021.1
Uncharacterized protein; Encoded by transcript RCOM_0957040A
   
    0.902
XP_002517579.1
WD-repeat protein, putative; Encoded by transcript RCOM_0897950A
   
    0.861
XP_002513022.1
Protein arginine n-methyltransferase, putative; Encoded by transcript RCOM_1451910A; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family
   
    0.859
XP_002520985.1
Nucleotide binding protein, putative; Encoded by transcript RCOM_0992180A
   
    0.847
XP_002529740.1
Ribosome biogenesis protein brix, putative; Encoded by transcript RCOM_1362610A
   
    0.810
XP_002528452.1
Elongator complex protein 1; Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation
   
    0.778
XP_002530481.1
Uncharacterized protein; Encoded by transcript RCOM_0566450A
   
    0.778
XP_002513923.1
Nodulin-26, putative; Encoded by transcript RCOM_1035440A; Belongs to the MIP/aquaporin (TC 1.A.8) family
      
 0.761
XP_002528309.1
Embryonic abundant protein, putative; Encoded by transcript RCOM_0838360A
      
 0.755
XP_002519054.1
Pentatricopeptide repeat-containing protein, putative; Encoded by transcript RCOM_0936200A
   
    0.740
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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