STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_1431980Ankyrin repeat domain protein, putative. (396 aa)    
Predicted Functional Partners:
RCOM_0292970
Signal recognition particle protein, putative.
   
 0.956
RCOM_1965160
Signal recognition particle protein, putative.
   
 0.956
RCOM_0982230
Inner membrane protein PPF-1, chloroplast, putative.
    
 
 0.889
RCOM_1082900
Uncharacterized protein.
    
 
 0.742
RCOM_0547630
Signal recognition particle 14 kDa protein, putative.
    
 0.680
RCOM_1614410
Cell division protein ftsy, putative.
    
 
 0.667
RCOM_1674930
Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
    
 0.646
RCOM_1222120
Vacuolar protein sorting protein, putative.
    
 0.632
RCOM_1678490
Ankyrin repeat-containing protein, putative.
  
   
 0.608
RCOM_1503780
Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP68 family.
     
 0.596
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.