STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_1471300Peptidyl-prolyl cis-trans isomerase. (145 aa)    
Predicted Functional Partners:
RCOM_0437060
Anthranilate synthase component II, putative.
  
  
 0.802
RCOM_1909160
Tryptophan biosynthesis protein, trpf, putative.
  
  
 0.802
RCOM_0884730
Peptidylprolyl isomerase.
   
 
 0.752
RCOM_1479020
Rotamase, putative.
 
   
 0.730
RCOM_0546740
Trigger factor, putative.
  
  
 0.730
RCOM_0839750
Sorting and assembly machinery (Sam50) protein, putative.
  
 
 0.706
RCOM_1813570
Rotamase, putative.
  
  
0.674
RCOM_1996120
Transcription elongation protein nusA, putative.
  
  
 0.658
RCOM_1510480
Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.
  
  
 0.643
RCOM_1370030
Protein SSU72, putative.
   
 
 0.638
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.