STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_1336080Sphingolipid fatty acid alpha hydroxylase; Belongs to the sterol desaturase family. (237 aa)    
Predicted Functional Partners:
RCOM_1681040
C-4 methyl sterol oxidase, putative; Belongs to the sterol desaturase family.
   
 
 0.852
RCOM_0732630
C-4 methyl sterol oxidase, putative; Belongs to the sterol desaturase family.
   
 
 0.852
RCOM_1728170
Sterol desaturase, putative; Belongs to the sterol desaturase family.
   
 
 0.757
RCOM_0836090
Sur2 hydroxylase/desaturase, putative; Belongs to the sterol desaturase family.
   
 
 0.756
RCOM_0297100
Sur2 hydroxylase/desaturase, putative; Belongs to the sterol desaturase family.
   
 
 0.756
RCOM_1032820
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
   
 
 0.751
RCOM_0900580
Delta 9 desaturase, putative; Belongs to the fatty acid desaturase type 1 family.
   
  
 0.667
RCOM_1176940
Serine palmitoyltransferase I, putative.
   
 
 0.633
RCOM_1445700
Serine palmitoyltransferase, putative.
   
 
 0.627
RCOM_1438480
Cytochrome P450, putative; Belongs to the cytochrome P450 family.
   
 
 0.612
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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