STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_1044250DELLA protein GAI1, putative; Belongs to the GRAS family. (594 aa)    
Predicted Functional Partners:
RCOM_0819650
Ubiquitin protein ligase E3a, putative.
   
 0.832
RCOM_0490830
Hect ubiquitin-protein ligase, putative.
   
 0.811
RCOM_0293400
Ubiquitin, putative.
   
 0.735
RCOM_1452000
Ankyrin-repeat containing protein, putative.
    
 0.690
RCOM_1436820
Ring finger, putative.
    
 0.687
RCOM_1019980
Uncharacterized protein.
    
 0.683
RCOM_1720820
Uncharacterized protein.
    
 0.683
RCOM_0915870
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.683
RCOM_1506190
Ubiquitin-activating enzyme E1 domain-containing protein, putative.
   
 0.577
RCOM_1093200
Ubiquitin-activating enzyme E1, putative; Belongs to the ubiquitin-activating E1 family.
  
 0.575
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.