STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_0826270Histone H2A; Belongs to the histone H2A family. (134 aa)    
Predicted Functional Partners:
RCOM_0461620
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 0.973
RCOM_1323630
DNA binding protein, putative.
    
 
 0.917
RCOM_1282210
RuvB-like helicase; Belongs to the RuvB family.
   
 0.916
RCOM_1402410
Zinc finger protein, putative.
    
 
 0.895
RCOM_0342920
Helicase, putative.
    
 0.887
RCOM_1599800
Transcription factor, putative.
   
 0.886
RCOM_1019520
Transcription factor, putative.
   
 0.886
RCOM_0302130
Transcription factor, putative.
   
 0.886
RCOM_1345900
DNA methyltransferase 1-associated protein, putative.
    
 
 0.881
RCOM_1032900
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.865
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.