STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_0245570LOB domain-containing protein, putative. (225 aa)    
Predicted Functional Partners:
RCOM_0710450
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
    
 0.628
RCOM_0679520
Uncharacterized protein.
   
 0.559
RCOM_1550630
SET domain-containing protein.
   
 0.551
RCOM_0225530
E2F4,5, putative.
    
 0.518
RCOM_0726260
Uncharacterized protein.
  
     0.510
RCOM_1031400
Amino acid transporter, putative.
      
 0.508
RCOM_1593330
Exocyst complex component sec3, putative.
      
 0.504
RCOM_1096960
Protein kinase domain-containing protein.
  
 
  0.504
RCOM_1454040
GRAM domain-containing protein.
  
     0.499
RCOM_1320640
Protein WUSCHEL, putative.
    
 
 0.495
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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