Co-purification, co-crystallization, Yeast2Hybrid, Genetic Interactions, etc ... as imported from primary sources.
Groups of genes that are frequently observed in each other's genomic neighborhood.
Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
LOB domain-containing protein, putative; Encoded by transcript RCOM_0245570A (225 aa)
Predicted Functional Partners:
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (1109 aa)
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (1119 aa)
RALFL33, putative; Encoded by transcript RCOM_1408850A (128 aa)
Zinc transporter, putative; Encoded by transcript RCOM_0522420A (350 aa)
Kinase, putative; Encoded by transcript RCOM_0995940A; Belongs to the carbohydrate kinase PfkB family (370 aa)
Structural maintenance of chromosomes protein; Encoded by transcript RCOM_0499140A; Gene spans sequencing gaps and may be missing exons (1220 aa)
Transcription cofactor, putative; Encoded by transcript RCOM_0011080A (1382 aa)
Uncharacterized protein; Encoded by transcript RCOM_1169250A (323 aa)
Peroxisomal membrane protein 2, pxmp2, putative; Encoded by transcript RCOM_1168390A; Belongs to the peroxisomal membrane protein PXMP2/4 family (176 aa)
Uncharacterized protein; Encoded by transcript RCOM_1217860A (121 aa)
Your Current Organism:
NCBI taxonomy Id: 3988 Other names: R. communis, Ricinus communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean