STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KSL11Stemod-13(17)-ene synthase; Catalyzes the conversion of syn-copalyl diphosphate to stemodene. (816 aa)    
Predicted Functional Partners:
OsI_06748
Uncharacterized protein; Belongs to the terpene synthase family.
     
0.861
OsI_03423
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
     
 0.514
OsI_20844
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
     
 0.514
OsI_23428
Uncharacterized protein.
     
 0.505
OsI_23430
Uncharacterized protein; Belongs to the cytochrome P450 family.
     
 0.505
OsI_23427
Uncharacterized protein; Belongs to the cytochrome P450 family.
     
 0.505
OsI_30696
Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
  
     0.492
OsI_26813
Alkyl transferase; Belongs to the UPP synthase family.
     
 0.484
OsI_28830
Uncharacterized protein.
  
     0.467
OsI_05585
Remorin_C domain-containing protein.
  
     0.455
Your Current Organism:
Oryza sativa Indica
NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.