STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A3AYP1_ORYSJOs04g0679400 protein. (258 aa)    
Predicted Functional Partners:
A0A0P0W9C3
Os04g0348300 protein.
   
 0.940
PRP19
Pre-mRNA-processing factor 19; Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair.
   
 0.911
Q0JKK3_ORYSJ
Os01g0667800 protein.
   
 0.907
U2AF35B
Splicing factor U2af small subunit B; Necessary for the splicing of pre-mRNA; Belongs to the splicing factor SR family.
   
 0.907
C3H16_ORYSJ
Zinc finger CCCH domain-containing protein 16.
   
 0.907
U2AF35A
Splicing factor U2af small subunit A; Necessary for the splicing of pre-mRNA.
   
 0.907
A0A0N7KQA7
Os08g0559700 protein.
   
 0.891
Q33BE1_ORYSJ
Transposon protein, putative, CACTA, En/Spm sub-class, expressed.
   
 0.891
Q69IN4_ORYSJ
cDNA clone:J013129L11, full insert sequence.
   
 0.891
Q6EUK2_ORYSJ
cDNA clone:J023062O22, full insert sequence.
   
 
 0.875
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.