STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl1450S ribosomal protein L14, chloroplastic; Binds to 23S rRNA. (123 aa)    
Predicted Functional Partners:
rpl16
50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family.
 
 0.998
A0A0P0Y1A9
Os11g0269100 protein; Belongs to the universal ribosomal protein uL16 family.
 
 0.996
RPL16
60S ribosomal protein L16, mitochondrial.
  
 0.994
Q2QNF3_ORYSJ
60S ribosomal protein L2, putative, expressed.
  
 0.994
rps8
30S ribosomal protein S8, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.
 
 
 0.991
rpl2-A
50S ribosomal protein L2, chloroplastic.
 
 0.991
Q9FP55_ORYSJ
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.991
Q69UI8_ORYSJ
cDNA clone:001-011-G09, full insert sequence; Belongs to the eukaryotic ribosomal protein P1/P2 family.
   
 0.990
rpl22
50S ribosomal protein L22, chloroplastic; This protein binds specifically to 23S rRNA; Belongs to the universal ribosomal protein uL22 family.
  
 0.988
rpl36
50S ribosomal protein L36, chloroplastic.
  
 
 0.988
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.