STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps12-A30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity). (124 aa)    
Predicted Functional Partners:
Q9LWD2_ORYSJ
cDNA clone:001-104-E12, full insert sequence.
  
 0.997
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
  
 0.996
rps2
30S ribosomal protein S2, chloroplastic.
  
 0.994
RPL27
50S ribosomal protein L27, chloroplastic; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.992
A0A0P0XU17
Os10g0411700 protein.
   
 0.991
RPS19A
40S ribosomal protein S19; Belongs to the eukaryotic ribosomal protein eS19 family.
   
 0.991
rps16
30S ribosomal protein S16, chloroplastic.
  
 0.990
Q6YU81_ORYSJ
cDNA clone:J033117P11, full insert sequence; Belongs to the universal ribosomal protein uS5 family.
  
 0.989
Q7XAM9_ORYSJ
cDNA clone:J023022A05, full insert sequence; Belongs to the universal ribosomal protein uS9 family.
  
 0.989
rps9
30S ribosomal protein S9, chloroplast, putative, expressed; Belongs to the universal ribosomal protein uS9 family.
  
 0.989
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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