STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RDR1Probable RNA-dependent RNA polymerase 1; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs); Belongs to the RdRP family. (740 aa)    
Predicted Functional Partners:
A0A0P0WDW6
Os04g0572600 protein.
    
 
 0.830
A0A0P0WJV1
Os05g0230200 protein.
    
 
 0.830
A0A0P0XQV4
Os09g0555187 protein.
    
 
 0.830
Q0IZR2_ORYSJ
Os09g0555200 protein.
    
 
 0.830
Q6ZA50_ORYSJ
cDNA clone:J013053F13, full insert sequence.
    
 
 0.797
A0A0P0WFD3
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.793
Q6YX88_ORYSJ
cDNA clone:006-305-H09, full insert sequence.
    
   0.793
Q0J7Q4_ORYSJ
Os08g0171600 protein.
    
 
 0.787
A0A0P0X0W6
Os06g0697400 protein.
    
   0.754
Q84SP5_ORYSJ
RNA polymerase Rpb8 family protein, expressed; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
   0.754
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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