STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q0ILJ9_ORYSJOs12g0640800 protein. (227 aa)    
Predicted Functional Partners:
Q75I81_ORYSJ
Pinin/SDK/memA/ protein conserved region containing protein, expressed.
   
 0.941
A0A0P0XFY6
Os08g0416400 protein.
   
  0.913
Q337J6_ORYSJ
FF domain containing protein, expressed.
   
 0.902
Q69V60_ORYSJ
cDNA clone:J033113H11, full insert sequence.
    
 
 0.871
A0A0P0V1B4
Os01g0263600 protein.
    
 
 0.868
Q0IWN2_ORYSJ
Os10g0498600 protein.
    
 
 0.868
OsJ_12293
DEAD-box ATP-dependent RNA helicase 21; ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing (By similarity); Belongs to the DEAD box helicase family. DDX23/PRP28 subfamily.
   
 0.845
P0505H05.40
DEAD-box ATP-dependent RNA helicase 22.
   
 0.845
A0A0P0VJK6
Os02g0511500 protein.
   
 
 0.829
A0A0P0WIH1
Os05g0163250 protein.
    
 
 0.828
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.