STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q0IVN4_ORYSJOs10g0562500 protein. (426 aa)    
Predicted Functional Partners:
Q0JAH8_ORYSJ
Os04g0598800 protein.
    
 
 0.474
Q5VRF2_ORYSJ
cDNA clone:J023055H24, full insert sequence; Belongs to the protein kinase superfamily.
    
 
 0.474
A0A0P0XXD6
Os10g0562200 protein.
      
 0.473
A0A0P0XXJ5
Os10g0562550 protein.
      
 0.473
Q7XC47_ORYSJ
Os10g0562600 protein.
      
 0.473
A0A0P0V7H2
Os01g0715000 protein.
      
 0.449
Q0DFD6_ORYSJ
cDNA clone:J023142J09, full insert sequence.
      
 0.405
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.