STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q10HX5_ORYSJcDNA clone:006-304-F12, full insert sequence. (232 aa)    
Predicted Functional Partners:
Q94DY4_ORYSJ
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
   
 0.992
Q6ESB7_ORYSJ
cDNA clone:J033116E04, full insert sequence.
    
 0.987
A0A0P0VRR2
Os02g0833200 protein.
    
 0.974
Q5N773_ORYSJ
cDNA clone:J033043F13, full insert sequence.
     
 0.918
A0A0P0VL75
Os02g0596500 protein.
     
 0.917
Q10SX2_ORYSJ
SNF7 family protein, expressed.
     
 0.901
Q7XI79_ORYSJ
Os07g0479400 protein.
     
 0.901
A0A0P0XQU3
Vacuolar protein sorting-associated protein; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
     
 0.900
A0A0P0Y553
Vacuolar protein sorting-associated protein; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
     
 0.900
Q5NAE1_ORYSJ
Os01g0286000 protein.
     
 0.898
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.