STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U2AF65BSplicing factor U2af large subunit B; Necessary for the splicing of pre-mRNA. (548 aa)    
Predicted Functional Partners:
Q0JKK3_ORYSJ
Os01g0667800 protein.
   
 0.990
U2AF35B
Splicing factor U2af small subunit B; Necessary for the splicing of pre-mRNA; Belongs to the splicing factor SR family.
   
 0.990
U2AF35A
Splicing factor U2af small subunit A; Necessary for the splicing of pre-mRNA.
   
 0.990
A0A0P0VST4
Os03g0138100 protein.
     
0.976
U2AF65A
Splicing factor U2af large subunit A; Necessary for the splicing of pre-mRNA.
  
  
0.971
C3H16_ORYSJ
Zinc finger CCCH domain-containing protein 16.
   
 0.955
Q33BE1_ORYSJ
Transposon protein, putative, CACTA, En/Spm sub-class, expressed.
   
0.947
Q5JJU2_ORYSJ
cDNA clone:J033112L14, full insert sequence.
  
  
0.945
A0A0P0W9C3
Os04g0348300 protein.
   
 0.940
Q6YTY0_ORYSJ
Small nuclear ribonucleoprotein G.
   
 0.920
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.