STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q337D3_ORYSJMethionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). (390 aa)    
Predicted Functional Partners:
Q0JBZ7_ORYSJ
Os04g0501000 protein; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.943
Q94CM9_ORYSJ
Os01g0348700 protein; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.943
A0A0P0XJU9
Os08g0542100 protein.
  
 
 0.939
Q0JAC6_ORYSJ
cDNA clone:J033044G24, full insert sequence.
  
 
 0.939
Q6YYR2_ORYSJ
cDNA clone:J033112B19, full insert sequence.
  
 
 0.939
RPS15
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 
 0.927
Q851P5_ORYSJ
40S ribosomal protein S15, putative, expressed; Belongs to the universal ribosomal protein uS19 family.
  
 
 0.927
Q7XZX4_ORYSJ
40S ribosomal protein S29, putative, expressed.
  
 
 0.921
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
  
   0.920
PES
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 
 0.914
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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