STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q337J6_ORYSJFF domain containing protein, expressed. (1078 aa)    
Predicted Functional Partners:
Q69K06_ORYSJ
Os09g0103600 protein.
   
 0.992
A0A0P0XCD9
Os08g0154225 protein; Belongs to the DEAD box helicase family.
   
 0.985
RH45_ORYSJ
DEAD-box ATP-dependent RNA helicase 45; Belongs to the DEAD box helicase family. DDX46/PRP5 subfamily.
   
 0.985
OsJ_26125
DEAD-box ATP-dependent RNA helicase 42; Belongs to the DEAD box helicase family. DDX46/PRP5 subfamily.
   
 0.985
A0A0P0W9C3
Os04g0348300 protein.
   
  0.984
A0A0P0WWK8
Os06g0335101 protein.
   
 0.984
Q6ET26_ORYSJ
Os02g0280100 protein.
   
 0.984
Q6KAB7_ORYSJ
Os02g0294000 protein.
   
 0.984
Q9LWY5_ORYSJ
Os06g0106100 protein.
   
  0.983
PRP19
Pre-mRNA-processing factor 19; Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair.
    
 0.982
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.