STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q5JK67_ORYSJcDNA clone:001-017-E11, full insert sequence. (363 aa)    
Predicted Functional Partners:
Q6Z246_ORYSJ
cDNA clone:J033051D02, full insert sequence.
 
0.985
A0A0P0WV37
Os06g0257200 protein.
   
 0.968
A0A0P0XZ68
Os11g0153600 protein.
  
 
 
 0.968
SRP19
Signal recognition particle 19 kDa protein; Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.
   
 0.968
SRP14
Signal recognition particle 14 kDa protein; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding (By similarity).
    
 0.964
A0A0P0XEB1
Os08g0323000 protein.
    
 0.948
A0A0P0XEL7
Os08g0323266 protein.
    
 0.948
Q53QG1_ORYSJ
Signal recognition particle 54 kDa protein, chloroplast, putative, expressed.
  
 
 
0.945
A0A0P0VCW4
Os01g0946800 protein.
   
 0.915
A0A0P0VF79
Os02g0164000 protein.
   
 0.915
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.