STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q5JNI6_ORYSJOs01g0747700 protein. (305 aa)    
Predicted Functional Partners:
Q10P29_ORYSJ
Immature colon carcinoma transcript 1 protein, putative, expressed.
    
 
 0.814
B7EFL6_ORYSJ
cDNA clone:J023001D05, full insert sequence.
    
 
 0.805
Q0DHP9_ORYSJ
Os05g0452600 protein.
    
   0.798
Q5ZA34_ORYSJ
cDNA clone:001-028-E08, full insert sequence.
   
   0.794
A0A0P0VSE5
Os03g0122200 protein; Belongs to the universal ribosomal protein uL11 family.
    
 
 0.776
Q9AV82_ORYSJ
Ribosomal protein L11 containing protein, expressed; Belongs to the universal ribosomal protein uL11 family.
    
 
 0.776
Q8LR04_ORYSJ
cDNA clone:J023110L12, full insert sequence.
    
   0.773
A0A0P0X9H0
Os07g0647300 protein.
    
   0.772
RPL27
50S ribosomal protein L27, chloroplastic; Belongs to the bacterial ribosomal protein bL27 family.
    
   0.772
Q653V9_ORYSJ
cDNA clone:006-303-A09, full insert sequence; Belongs to the universal ribosomal protein uL24 family.
    
   0.772
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.