STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Q5SN59_ORYSJRibokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (367 aa)    
Predicted Functional Partners:
A3AD51_ORYSJ
Os03g0100040 protein.
   
 0.957
P0482F12.28-1
Ribose-phosphate pyrophosphokinase 1, chloroplastic; Belongs to the ribose-phosphate pyrophosphokinase family.
   
 0.957
Q0DEU8_ORYSJ
Os06g0133800 protein.
  
 0.955
Q7XWP9_ORYSJ
cDNA clone:J023019B19, full insert sequence.
  
 0.955
Q10CS9_ORYSJ
Ribose 5-phosphate isomerase, putative, expressed.
    
 0.954
Q33AE4_ORYSJ
Phosphoglucomutase, chloroplast, putative, expressed.
    
 0.954
Q6ZEZ2_ORYSJ
cDNA clone:001-034-G01, full insert sequence.
    
 0.954
Q7XVP0_ORYSJ
cDNA clone:J033129E13, full insert sequence.
    
 0.954
Q9AUQ4_ORYSJ
Phosphoglucomutase, cytoplasmic 2, putative, expressed; Belongs to the phosphohexose mutase family.
    
 0.954
P0012B02.3-1
Ribose-phosphate pyrophosphokinase 2, chloroplastic.
   
 0.899
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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