STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q5Z4M6_ORYSJcDNA clone:J013071B03, full insert sequence. (537 aa)    
Predicted Functional Partners:
Q9LWD2_ORYSJ
cDNA clone:001-104-E12, full insert sequence.
   
 
 0.999
Q0JBZ7_ORYSJ
Os04g0501000 protein; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.994
Q94CM9_ORYSJ
Os01g0348700 protein; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.994
A0A0P0W059
Os03g0612600 protein.
  
 
 0.990
RPL27
50S ribosomal protein L27, chloroplastic; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.988
RPS15
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 
 0.987
Q851P5_ORYSJ
40S ribosomal protein S15, putative, expressed; Belongs to the universal ribosomal protein uS19 family.
  
 
 0.987
Q65XC5_ORYSJ
cDNA clone:J023015G24, full insert sequence.
   
 
 0.986
Q6I600_ORYSJ
cDNA clone:J013153H24, full insert sequence.
  
 
 0.986
Q6K241_ORYSJ
cDNA clone:006-201-D06, full insert sequence.
  
 
 0.986
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.