STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q6AUF5_ORYSJ60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (178 aa)    
Predicted Functional Partners:
Q69UI8_ORYSJ
cDNA clone:001-011-G09, full insert sequence; Belongs to the eukaryotic ribosomal protein P1/P2 family.
  
 0.998
RPS16A
40S ribosomal protein S16.
   
 0.997
Q2QNF3_ORYSJ
60S ribosomal protein L2, putative, expressed.
   
 0.997
Q9FP55_ORYSJ
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.997
A0A0P0VSV2
Os03g0141000 protein.
  
 0.996
A0A0P0XW06
Os10g0465800 protein.
  
 0.996
RPL3
60S ribosomal protein L3; The L3 protein is a component of the large subunit of cytoplasmic ribosomes; Belongs to the universal ribosomal protein uL3 family.
   
 0.996
Q0JBZ7_ORYSJ
Os04g0501000 protein; Belongs to the universal ribosomal protein uL23 family.
   
 0.996
RPL3B
60S ribosomal protein L3, putative, expressed; Belongs to the universal ribosomal protein uL3 family.
   
 0.996
Q6K1W6_ORYSJ
cDNA clone:001-047-A12, full insert sequence; Belongs to the universal ribosomal protein uL22 family.
   
 0.996
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.