STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q6EQ06_ORYSJcDNA clone:J013021M02, full insert sequence. (280 aa)    
Predicted Functional Partners:
Q7XZZ2_ORYSJ
Not1 N-terminal domain, CCR4-Not complex component family protein, expressed.
    
 0.911
A0A0P0WNS9
Os05g0486300 protein.
   
 0.894
Q10D97_ORYSJ
cDNA clone:002-127-D03, full insert sequence.
   
 0.894
Q10R99_ORYSJ
Endonuclease/Exonuclease/phosphatase family protein, expressed.
    
 0.876
Q338D5_ORYSJ
Endonuclease/exonuclease/phosphatase family protein, putative, expressed.
    
 0.876
A0A0P0VHV6
Os02g0296400 protein.
   
 0.873
A0A0P0VHZ9
Os02g0301700 protein.
   
 0.873
Q10CF3_ORYSJ
Cell differentiation protein rcd1, putative, expressed.
   
 0.873
Q6K272_ORYSJ
cDNA clone:J033135J15, full insert sequence.
    
 0.872
A0A0N7KGF0
Os03g0102300 protein.
   
 0.867
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.