STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYCF1-3Putative cyclin-F1-3; Belongs to the cyclin family. Cyclin F subfamily. (389 aa)    
Predicted Functional Partners:
CKS1
Cyclin-dependent kinases regulatory subunit 1; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function; Belongs to the CKS family.
   
 0.922
CDC6
Cell division control protein 6 homolog; May be involved in the initiation of DNA replication.
   
 0.877
WEE1
Wee1-like protein kinase.
   
 0.827
A0A0P0VQD8
Os02g0785900 protein.
    
 0.820
CDKB1-1
Cyclin-dependent kinase B1-1.
   
 0.806
Q9LIY1_ORYSJ
cDNA clone:001-117-G01, full insert sequence; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.800
ORC1
Origin of replication complex subunit 1; Essential protein (By similarity). Component of the origin recognition complex (ORC) that binds origins of replication. It has a role in both chromosomal replication and mating type transcriptional silencing. Binds to the ARS consensus sequence (ACS) of origins of replication (By similarity). H3K4me3 effector that regulates positively the transcription of a subset of genes (By similarity). Required for cell proliferation.
   
 0.795
Q0DIX4_ORYSJ
Os05g0354300 protein.
    
 0.789
MCM4
DNA replication licensing factor MCM4; Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells.
   
 0.789
Q6H4D4_ORYSJ
Os09g0274800 protein; Belongs to the SKP1 family.
    
 0.782
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.