STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q6ZD40_ORYSJOs08g0537500 protein. (271 aa)    
Predicted Functional Partners:
Q0JB94_ORYSJ
Os04g0548300 protein.
   
 0.990
Q10LF8_ORYSJ
Nucleolar protein Nop56, putative, expressed.
   
 0.987
Q8H2U5_ORYSJ
Os07g0661800 protein.
   
 0.987
B7F947_ORYSJ
cDNA, clone: J075009F20, full insert sequence.
   
 0.986
A0A0N7KGC5
Os02g0821800 protein.
   
 0.985
B7FA85_ORYSJ
cDNA, clone: J100055L06, full insert sequence.
   
 0.985
Q2QMC2_ORYSJ
Transducin family protein, putative, expressed.
   
 0.984
YAO_ORYSJ
U3 snoRNP-associated protein-like YAOH; Component of a nucleolar small nuclear ribonucleoprotein particle (snoRNP) thought to participate in the processing and modification of pre-ribosomal RNA (By similarity). Essential for embryogenesis (By similarity); Belongs to the WD repeat RRP9 family.
   
 0.981
Q0JAK5_ORYSJ
cDNA clone:J033052D05, full insert sequence.
   
 0.974
A0A0P0WZ76
Os06g0644600 protein.
   
 0.971
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.