STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q6ZL16_ORYSJcDNA clone:006-210-B07, full insert sequence. (342 aa)    
Predicted Functional Partners:
Q8LHL4_ORYSJ
cDNA clone:001-119-F11, full insert sequence.
   
 0.868
Q5ZCK9_ORYSJ
cDNA clone:J033069O22, full insert sequence; Belongs to the sterol desaturase family.
   
 0.863
Q53MQ7_ORYSJ
cDNA clone:J013157I04, full insert sequence.
   
 0.802
PSY1
Phytoene synthase 1, chloroplastic; Catalyzes the conversion of geranylgeranyl diphosphate to phytoene. Mediates the first committed step in carotenoid biosynthesis.
   
 0.774
PSY3
Phytoene synthase 3, chloroplastic; Catalyzes the conversion of geranylgeranyl diphosphate to phytoene. Mediates the first committed step in carotenoid biosynthesis. May play a role in regulating carotenoid flux in response to abiotic stress in roots. May control flux to carotenoid precursors that are required for abiotic stress-induced abscisic acid (ABA) formation in roots.
   
 0.773
O22105_ORYSJ
cDNA, clone: J090011P14, full insert sequence.
   
 0.773
PSY2
Phytoene synthase 2, chloroplastic; Catalyzes the conversion of geranylgeranyl diphosphate to phytoene. Mediates the first committed step in carotenoid biosynthesis.
   
 0.773
Q6Z368_ORYSJ
cDNA clone:001-114-B01, full insert sequence.
   
 0.773
Q6EQN5_ORYSJ
Os09g0352400 protein.
   
 0.772
P0436E04.5
Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase; Catalyzes the conversion of Delta(8)-sterols to their corresponding Delta(7)-isomers.
    
 0.751
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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