STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q75I90_ORYSJEukaryotic peptide chain release factor subunit 1-2, putative, expressed. (437 aa)    
Predicted Functional Partners:
A0A0P0VIM8
Os02g0456500 protein.
   
 0.984
A0A0N7KIR1
Os04g0270100 protein.
   
 0.967
A0A0P0Y344
Os11g0546000 protein.
   
 
 0.962
Q6K3B8_ORYSJ
cDNA clone:J033034C12, full insert sequence.
   
 
 0.962
Q75K79_ORYSJ
cDNA clone:002-112-G01, full insert sequence.
  
  
 
0.902
A0A0P0XM33
Os09g0331900 protein.
   
 0.881
REFA1
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.
   
 0.881
DRB3
Double-stranded RNA-binding protein 3; Binds double-stranded RNA.
   
 0.881
DRB8
Double-stranded RNA-binding protein 8; Binds double-stranded RNA.
   
 0.881
DRB7
Double-stranded RNA-binding protein 7; Binds double-stranded RNA.
   
 0.881
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.