STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q7XIL1_ORYSJcDNA clone:001-121-E04, full insert sequence. (172 aa)    
Predicted Functional Partners:
Q10QN3_ORYSJ
1,4-dihydroxy-2-naphthoate phytyltransferase family protein, expressed.
    
 0.856
LS
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
   
 0.737
Q69MT1_ORYSJ
cDNA clone:J023088I03, full insert sequence.
     
 0.687
B7EWK0_ORYSJ
cDNA clone:001-038-F07, full insert sequence.
  
 
 0.661
OsJ_33906
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the C-terminal section; belongs to the HAD-like hydrolase superfamily. MasA/MtnC family.
  
 
 0.661
Q10MF8_ORYSJ
Enoyl-CoA hydratase/isomerase family protein, expressed.
  
 0.652
Q8LR33_ORYSJ
Os01g0662700 protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.652
A0A0P0WBL6
Os04g0480050 protein.
  
 0.644
A0A0P0Y8U1
Os12g0264500 protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.644
Q2QPD5_ORYSJ
Fibronectin type III domain containing protein, expressed.
  
 0.644
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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