STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q7XUP5_ORYSJcDNA clone:002-103-B11, full insert sequence. (355 aa)    
Predicted Functional Partners:
RF2a
Transcription factor RF2a; Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication.
    
 0.852
Q5Z7N2_ORYSJ
cDNA clone:J013118C12, full insert sequence.
   
 0.835
Q10SM5_ORYSJ
Glycosyl hydrolases family 16 protein, expressed.
    
 0.783
CARM1
Probable histone-arginine methyltransferase CARM1; Methylates (mono- and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in several proteins involved in DNA packaging, transcription regulation, and mRNA stability. Recruited to promoters upon gene activation, methylates histone H3 and activates transcription via chromatin remodeling.
    
 0.783
Q0DY89_ORYSJ
Os02g0708600 protein.
    
 0.779
Q0DY90_ORYSJ
cDNA clone:002-114-G07, full insert sequence.
    
 0.779
A0A0N7KK55
Os05g0148500 protein.
    
 0.757
A0A0N7KSZ8
Os11g0520900 protein.
    
 0.757
A0A0P0WF83
Os04g0626900 protein.
    
 0.757
A0A0P0XNS7
Os09g0505200 protein.
    
 0.757
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.