STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q94LV0_ORYSJVesicle-associated membrane family protein, putative, expressed. (233 aa)    
Predicted Functional Partners:
Q9LGF8_ORYSJ
cDNA clone:002-103-B08, full insert sequence; Belongs to the syntaxin family.
    
 0.687
A0A0P0W1Z3
Os03g0704700 protein.
    
 0.672
A0A0P0XX25
Os10g0554100 protein.
    
 0.672
Q10NC7_ORYSJ
Oxysterol-binding protein, expressed; Belongs to the OSBP family.
    
 0.672
Q2QTR4_ORYSJ
cDNA clone:J023007B17, full insert sequence.
    
 0.672
Q6ZJR8_ORYSJ
Os08g0154900 protein.
    
 0.672
OST48
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across t [...]
    
 0.659
A0A0P0WWH9
Os06g0367500 protein.
   
 0.604
B7EAA3_ORYSJ
cDNA clone:J013001B09, full insert sequence.
   
 0.604
Q6ATF8_ORYSJ
cDNA clone:002-121-H04, full insert sequence.
   
 0.604
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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